Published

Shoot-root communication of DNA methylation

Genome browser of DNA methylation controlled  in Arabidopsis thaliana roots controlled by sRNAs from shoots. Experiments conducted by Mat whilst in the Ecker lab in collaboration with Tom Hardcastle and David Baulcombe's lab. Published in PNAS. 

Unpublished 

Transcription factor ChIP-seq

Genome browser of example chromatin immunoprecipitation sequencing (ChIP-seq) data mapping binding sites of a transcription factor genome-wide. Generated using the Illumina HiSeq platform. Experiments conducted by Mat whilst in the Ecker lab.

Published - Other Labs

The data following were produced by other laboratories. Senior authors and publications are acknowledged in the descriptions. We link to them here because they're particularly interesting!

ChIP-seq of EIN3

 Genome browser of binding sites for the transcription factor EIN3 mapped in time-series using ChIP-seq. Includes ethylene response time-series transcriptomes. Study published by Kat Chang and the Ecker lab.

Spontaneous epimutation

Genome browser of methylC-seq data that demonstrates spontaneous variation in DNA methylation of the Arabidopsis genome. Published  by the Ecker lab and lead by Bob Schmitz.

In vitro transcription factor binding assays

Database of DNA binding sequence preferences (motifs) for more than 1000 transcription factors from 54 eukaryotic species in vitro. From a published study that used in vitro protein binding microarrays. Carried out by Tim Hughes and Matt Weirauch.